[Chimera-users] Problem with coloring blobs

Eric Pettersen pett at cgl.ucsf.edu
Mon Feb 25 19:42:23 PST 2013


Hi Terry,
	The solution is to use the 1.7 release.  Those blips have been eliminated.  You could also try turning on interactive shadows (Tools->Viewing Controls->Effects).  If your graphics card supports them, they are very cool.

--Eric

On Feb 25, 2013, at 6:27 PM, Terry Lang wrote:

> Hey Guys,
> 
> 
>     I am trying to compare a before-and-after active site.  I have the CASTp pockets for each active site (2PXR pocket id 17 and 3H47 pocket id 18).  However, both pocket representations have little hang-overs that are not part of the continuous pocket; I'd really just like to show the continuous pocket.  I am trying to mask the overhangs and am failing.  I tried coloring them white but they block the pocket.  I then tried setting them to be transparent but now you can see through the entire blob (I sense a bug there).  I can't figure out how to delete just a part of the blob.  Other suggestions?
> 
> Thanks!
> Terry
> 
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