[Chimera-users] Drug-Protein Interaction

kanika sharma ksharma997 at gmail.com
Wed Feb 20 01:00:09 PST 2013


Thank you all for the answers. That is really helpful


On Wed, Feb 20, 2013 at 1:29 AM, Francois Berenger <berenger at riken.jp>wrote:

> On 02/20/2013 02:49 AM, Elaine Meng wrote:
>
>> Please see previous answer to same question:
>> <http://plato.cgl.ucsf.edu/**pipermail/chimera-users/2013-**
>> February/008461.html<http://plato.cgl.ucsf.edu/pipermail/chimera-users/2013-February/008461.html>
>> >
>>
>
> There is the ligplot software also.
> Might be nice to have plugged into Chimera.
>
>  On Feb 18, 2013, at 3:24 AM, kanika sharma wrote:
>>
>>  Hi All,
>>>
>>> I docked a drug to a protein structure using Autodock Vina. To view the
>>> result, I am using View Dock. I now have 5 positions in which the drug is
>>> docked into the protein. Is there a way to figure out which residues in the
>>> protein are interacting with the drug molecule at each position?
>>>
>>> --
>>> Regards,
>>>
>>> Kanika Sharma
>>>
>>
>>
>> ______________________________**_________________
>> Chimera-users mailing list
>> Chimera-users at cgl.ucsf.edu
>> http://plato.cgl.ucsf.edu/**mailman/listinfo/chimera-users<http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users>
>>
>>
> ______________________________**_________________
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
> http://plato.cgl.ucsf.edu/**mailman/listinfo/chimera-users<http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users>
>



-- 
*Regards,*
*
*
*Kanika Sharma*
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20130220/d308388a/attachment-0001.html>


More information about the Chimera-users mailing list