[Chimera-users] Drug-Protein Interaction

Francois Berenger berenger at riken.jp
Tue Feb 19 16:29:13 PST 2013


On 02/20/2013 02:49 AM, Elaine Meng wrote:
> Please see previous answer to same question:
> <http://plato.cgl.ucsf.edu/pipermail/chimera-users/2013-February/008461.html>

There is the ligplot software also.
Might be nice to have plugged into Chimera.

> On Feb 18, 2013, at 3:24 AM, kanika sharma wrote:
>
>> Hi All,
>>
>> I docked a drug to a protein structure using Autodock Vina. To view the result, I am using View Dock. I now have 5 positions in which the drug is docked into the protein. Is there a way to figure out which residues in the protein are interacting with the drug molecule at each position?
>>
>> --
>> Regards,
>>
>> Kanika Sharma
>
>
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