[Chimera-users] command to show Structure Diagrams?

Elaine Meng meng at cgl.ucsf.edu
Wed Feb 13 10:14:44 PST 2013


Hi Noel,
Sorry, there is no command to show structure diagrams.  If the demo must do this, the only possibility (that I know of) is to do it in a python script.  In the demo, you can use the "open" command to open and execute the *.py file (the script, which would be one of your demo data files).

For example, in the "Hormone-Receptor Complex Demo" that comes with Chimera, there is an "undo" command in panel 6 that opens a python script.  The script simply closes the sequence alignment window.

I don't know python, so someone else would need to help with the script itself.

Best,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Feb 12, 2013, at 5:02 PM, Noel Pace wrote:

> Dear Elaine, 
> 
> Thank you for your constant help...I am getting more proficient with the program language however I have encountered a difficulty and cannot resolve it using the manual.
> 
> I require the command to run the UTILITY: Structure diagram, then make it load SMILES code: C1[C at H]2[C@@H]([C@@H](S1)CCCCC(=O)O)NC(=O)N2
> 
> How can I make this possible please?
> 
> Thanks again,
> Noel




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