[Chimera-users] display of improper peptide bond

Tatiana Domitrovic tatianad at scripps.edu
Wed Dec 18 05:52:37 PST 2013


Hi,

I am trying to get rid of an improper bond that chimera is displaying between two nearby segments that are actually cleaved. The bond is distorted, creating long CACB bonds if B-spline mode is active. I tried to turn off the auto-chaining, but didn’t work. 

Because PYmol can properly display these segments as independent polypetides, I was wondering if there is other adjustment that I can try before manually deleting the bond. The PDB is 1ohf and the bond is between residue  570 and 571.

Cheers,


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