[Chimera-users] Attribute Calculator by command line?
Hurt, Darrell (NIH/NIAID) [E]
darrellh at niaid.nih.gov
Mon Dec 16 11:59:34 PST 2013
Hi Chimera friends,
I'm trying to calculate convexity as demonstrated in the Attributes tutorial:
I can do it with the graphical tools without a problem, but when I try to do it via the command line, I run into trouble. I cannot find any documentation on running the Attributes Calculator on the command line. I've tried using "setattr":
setattr a convexity atom.areaSAS/atom.areaSES
This command generates a new atom attribute called "convexity" for every atom, but the value of this attribute for every atom is literally "atom.areaSAS/atom.areaSES" instead of the calculated value.
Is there a way to calculate a new attribute value on the command line within Chimera? Sorry to be so demanding…
Darrell Hurt, Ph.D.
Section Head, Computational Biology
Bioinformatics and Computational Biosciences Branch (BCBB)
31 Center Drive, Room 3B62B, MSC 2135
Bethesda, MD 20892-2135
Web: BCBB Home Page<http://www.niaid.nih.gov/about/organization/odoffices/omo/ocicb/Pages/bcbb.aspx#niaid_inlineNav_Anchor>
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