[Chimera-users] Make bonds in a large polypeptide

Francesco Pietra chiendarret at gmail.com
Mon Aug 26 11:02:36 PDT 2013

Is there a limit in the number of atoms when using the function "make a
bond"? I was trying that in a polypeptide of 450 standard residues (I made
it a single model) and it did not work.

Just to not be cryptic, that need arises from having modeled by special
techniques the initial portion of the polypeptide. Now I would like to
replace that portion with the modeled one. I had restrained with
rmsd-colvars the dihedrals of a short stretch of alpha helix, so that I
could align the modeled portion with the polypeptide.

francesco pietra
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