[Chimera-users] Automatic struts for 3D printing?

Hurt, Darrell (NIH/NIAID) [E] darrellh at niaid.nih.gov
Fri Aug 16 14:32:51 PDT 2013


Hi everyone,

We are assembling an open data portal or "exchange" for producing "ready-to-3D-print" files for biological molecules, EM data, and other imaging data using some automated pipelines. A little bit more on our project can be found here:
http://www.hhs.gov/open/initiatives/ignite/3d-printing-exchange.html

A few years ago this came up on the "dev" discussion board:
http://www.cgl.ucsf.edu/pipermail/chimera-dev/2011/000800.html

In the email thread above, it mentions a script by George Phillips called "struts.py" that was modified for use in RasMol. I am familiar with his version of this script for PyMOL. It works very well and I have been using it for years. However, the VRML from PyMOL is sometimes buggy. I like the exports from Chimera much better, including the X3D2VRML and X3D2STL utilities. If I could get the same functionality of this "struts" script in Chimera, that would be one less thing I need to go to PyMOL for (the list is getting shorter and shorter!).

We're looking at doing it here, but I would welcome any contribution from the Chimera community if something already exists. Do you have anything? Is this script something of interest? Anyone interested in contributing to our "exchange" database/web portal? I would love any feedback you might have.

Thanks,
Darrell

--
Darrell Hurt, Ph.D.
Section Head, Computational Biology
Bioinformatics and Computational Biosciences Branch (BCBB)
OCICB/OSMO/OD/NIAID/NIH

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