[Chimera-users] docking with flexible side-chains

Elaine Meng meng at cgl.ucsf.edu
Tue Apr 16 13:26:31 PDT 2013


Hi Thomas,
Sorry, it does not.  The Chimera interface to AutoDock Vina only includes a limited set of options, fully documented here (or if you click the Help button on the interface):

<http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/vina/vina.html>

I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Apr 16, 2013, at 12:43 PM, Thomas Evangelidis wrote:

> Dear Chimera developers,
> 
> Isn't docking with flexible side-chains supported in the AutoDock Vina GUI? I am surprised I didn't find any pertinent information about it in the documentation or the mailing list archives.
> 
> thanks,
> Thomas
> 




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