[Chimera-users] pdb

Elaine Meng meng at cgl.ucsf.edu
Tue Apr 16 09:54:08 PDT 2013


On Apr 12, 2013, at 8:37 AM, Muhammad ALi wrote:

> when I download a ligand from PDB site it contains may ligand molecules ..and kindly tell me how to get a single ligand????

Hello,
Although you could close or delete any extra structures in Chimera after you open the file, this is not a Chimera question.

Instead, for questions about the PDB website you should ask the developers of that site (not the Chimera lists), or read their instructions.   I have never used their ligand download myself, but I see there are several options to control the output.  Read those options carefully and you may better understand what you are getting:
<http://www.rcsb.org/pdb/download/downloadLigands.do>

Elaine
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Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco




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