[Chimera-users] pipes and planks

Elaine Meng meng at cgl.ucsf.edu
Tue Oct 23 16:12:33 PDT 2012


Dear Ishu,
You probably just need to get Chimera 1.7 (daily build or snapshot). PipesAndPlanks has been improved significantly since the production release (1.6).  The newer versions are available here:
<http://www.cgl.ucsf.edu/chimera/download.html#daily>
<http://www.cgl.ucsf.edu/chimera/download.html#snapshots>

If you use the Help menu, it should match your downloaded version pretty well.  If you view the manual on the web, it might be for a different version than what you have downloaded.

List of changes since the production release:
<http://www.cgl.ucsf.edu/chimera/docs/relnotes/snapshot.html>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Oct 23, 2012, at 2:06 PM, Ishu Saraogi wrote:

> Dear Chimera Users:
> 
> I have been trying to makes pipes and planks in different colors for a
> co-crystal structure. I want each protein to be a certain color. The user
> manual says that I need to select "No colors" in the pipes and planks
> menu. However, this button is deactivated in my program.
> Has anyone else had that problem and is there a fix? I have tried using
> axes/planes command but it does not give me loops and sheets that I also
> need.
> 
> Any advice will be greatly appreciated.
> Thanks!
> Ishu
> 




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