[Chimera-users] (no subject)

Richard Sibout rsibout at gmail.com
Wed Nov 28 12:35:44 PST 2012


Hi Eric,
Thank you very much for your reply. I am really a novice with Chimera software
R.



2012/11/28, Eric Pettersen <pett at cgl.ucsf.edu>:
> On Nov 28, 2012, at 1:20 AM, Richard Sibout wrote:
>
>> Dear users of Chimera,
>> I can't find the definition of ACT, DTV, EDO...in the residue (non
>> standard) section.
>> Can someone help me to find these definitions ?
>
> Hi Richard,
> 	Here's three ways to get more info:
>
> 1) Use that menu to select the residue, then Actions->Focus to zoom in on it
> (if there are multiple copies, you may have to manually zoom), then hover
> the mouse over the residue.  The status line will show the full name of the
> compound.
>
> 2) Go to the Model Panel and choose the model in the list.  Click the
> "Attributes..." button in the button list.  At the bottom of the resulting
> dialog is a "PDB Headers" button.  Click that to see the header records of
> the PDB file.  The HETNAM and FORMUL records will have more info about the
> compound.  Other records that may have info:  TITLE, JRNL, and REMARK.
>
> 3) Go to the PDB website (www.rcsb.org) and in the Search bar click 'Ligand'
> and type the three-letter name of the compound.    A list should appear with
> the name under "Ligand ID" -- click that link to go to a page with a bunch
> of info about the compound.
>
> --Eric
>
>                         Eric Pettersen
>                         UCSF Computer Graphics Lab
>                         http://www.cgl.ucsf.edu
>
>
>


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