[Chimera-users] color surface by electrostatic potential from apbs dx file
matheus.froeyen at gmail.com
Tue Sep 20 00:32:18 PDT 2011
I try to show the electrostatic potential calculated by apbs and written to
a pot.dx file.
This works fine when using the mouse / menus.
However I try to do this also using the command line interface
because I need to repeat it many times.
$ chimera chimera.cmd
$ cat chimera.cmd:
scolor #0 volume #1 cmap rainbow
scolor #0 volume #1 cmap -15,red:-5,yellow:0,green:5,cyan:15,blue
I don't get an error but the surface is colored by volume data, not by
Also the popup window "Surface Color" is not updated for the selected
In the surface color popup I need to select color surface "MSMS surface"
change "volume data value" to "electrostatic potential"
and then push the button "Color". Then I get what I want, but unfortunately
using the mouse again.
This should be done by the script too, I guess?
I m using the last stable chimera 64 version for unix on redhat.
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