[Chimera-users] structure editing query

Bala subramanian bala.biophysics at gmail.com
Mon Sep 12 09:43:15 PDT 2011

Thank you Elaine and Mary,

Now i am able to do the modification now. It is wonderful to have an option
to adjust the newly added bonds.


On Mon, Sep 12, 2011 at 7:11 AM, MARY VARUGHESE <maryvjes1985 at yahoo.co.in>wrote:

> hi,
> consider creating bonds only after checking their valencies and bondtype
> like single or double bond.
> Hope this will help you.
> Mary
> --- On *Sat, 10/9/11, Bala subramanian <bala.biophysics at gmail.com>* wrote:
> From: Bala subramanian <bala.biophysics at gmail.com>
> Subject: [Chimera-users] structure editing query
> To: "chimera-users BB" <chimera-users at cgl.ucsf.edu>
> Date: Saturday, 10 September, 2011, 4:17 PM
> Friends,
> I am trying to modify the sugar of a nucleotide. I am interested in making
> a linkage of two carbons in the sugar as in the attached pdb. I tried to use
> the Build structure -> modify structure option but it does not work in the
> sense that when i select carbon atom (c2') and tried to connect it to an
> oxygen, chimera says that it is already bonded and hence some bonds to
> create a new one. Is there any way to make such linkages as in the pdb ?
> Thanks,
> Bala
> -----Inline Attachment Follows-----
> _______________________________________________
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu<http://mc/compose?to=Chimera-users@cgl.ucsf.edu>
> http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20110912/cc421c7f/attachment.html>

More information about the Chimera-users mailing list