[Chimera-users] swapna: preserve option

Bala subramanian bala.biophysics at gmail.com
Wed Sep 7 01:21:13 PDT 2011


1) I used swapna command with preserve true option but chimera complains it
as mangled specifier. The preserve option is denoted in online documentation


2) Just for a try i downloaded the 1VT7.pdb and changed the Guanine (first
residue in chain A) to Adenine: swapna A :1.A but i found that added A is
rotated. I mean the plane of A is not matching with that G (originally
present in the structure). I am not sure if the preserve option is working.
To be precise, i want added base to have the same plane as the original one.

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