[Chimera-users] Chimera with 50000 pdb files

mselvaraj at mbu.iisc.ernet.in mselvaraj at mbu.iisc.ernet.in
Tue May 31 01:54:10 PDT 2011

Dear all,
     I have some 50000 pdbs obtained from a md simulation of my protein.  I
would like to calculate ellipsoid (with 'measure inertia' command) around
the protein molecule in each pdb and get their axes.  Is there a
provision/script  in chimera to run multiple pdbs and get the axes in a
file separately? Any suggestions on this will be helpful.  Thanks in

yours truly,
M. Selvaraj,
Graduate student,
Molecular Biophysics Unit,
Indian Institute of Science,
Bangalore 560 012.

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