[Chimera-users] error: from DockPrep import prep

wascm wascm at 126.com
Thu Mar 10 21:28:00 PST 2011

Dir sir

I try to write a indenpendent python script and run it from command line

some global variables was first set:

  export LD_LIBRARY_PATH=/home/wascm/chimera/lib:$LD_LIBRARY_PATH
  export PYTHONPATH=/home/wascm/chimera/share:/home/wascm/chimera/lib:$PYTHONPATH
  export CHIMERA=/home/wascm/chimera

the script work well when import following module
    import chimera
    from chimera import runCommand, openModels, MSMSModel
    from WriteMol2 import writeMol2
    from WriteDMS import writeDMS
however, when add the code:
   from DockPrep import prep

the error information as follows:
Traceback (most recent call last):
  File "./xx.py", line 12, in <module>
    from DockPrep import prep
  File "/home/wascm/chimera/share/DockPrep/__init__.py", line 15, in <module>
    from prefs import prefs, defaults, INCOMPLETE_SC, MEMORIZED_SETTINGS
  File "/home/wascm/chimera/share/DockPrep/prefs.py", line 13, in <module>
    from Rotamers.prefs import defaults as rotamerDefaults
  File "/home/wascm/chimera/share/Rotamers/__init__.py", line 574, in <module>
    from prefs import defaults, CLASH_METHOD, CLASH_THRESHOLD, HBOND_ALLOWANCE
  File "/home/wascm/chimera/share/Rotamers/prefs.py", line 13, in <module>
    from DetectClash.prefs import CLASH_THRESHOLD, HBOND_ALLOWANCE, PB_COLOR, \
  File "/home/wascm/chimera/share/DetectClash/__init__.py", line 157, in <module>
    val = getColorByName(val)
  File "/home/wascm/chimera/share/chimera/colorTable.py", line 87, in getColorByName
    color = chimera.MaterialColor(r/255.0, g/255.0, b/255.0)
ValueError: missing default material


how can i solve this problem?

best wishes

Tao Cui

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20110311/154f2229/attachment.html>

More information about the Chimera-users mailing list