[Chimera-users] custom residue label
stkachev at cellsignal.com
Mon Jun 20 08:26:04 PDT 2011
Yes it definitely helps, thanks!
On Jun 17, 2011, at 5:20 PM, Elaine Meng wrote:
> Hi Sasha,
> If "programatically" includes Chimera commands, you could use a
> command something like:
> setattr r label "Lys-57" :656.e
> Non-programatically, it can also be done by selecting the residue
> and then using the menu (Actions... Label... residue... custom).
> I don't know python, so if that is what you meant, somebody else
> will have to answer.
> However, you might just want to edit the PDB file in the first place
> to avoid the bother. You could text-edit it "manually" or use one
> of these handy PDB-editing web servers:
> I hope this helps,
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> On Jun 17, 2011, at 1:49 PM, Sasha Tkachev wrote:
>> How to programmatically set a residue label to an arbitrary text,
>> to say something like:
>> rlabel :656.E "Lys-57"
>> What happens in some structures, like for instance 1U35 structure
>> contains H3 proteins, is that residue numbers in a PDB file is
>> different from residue number of the sequence. In this particular
>> example Lys57 of H3 on chain E maps to PDB residue number 656. So
>> if I
>> use default labeling I am getting wrong results...
>> Chimera-users mailing list
>> Chimera-users at cgl.ucsf.edu
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