[Chimera-users] Script for positioning particles according the coordinates.
pett at cgl.ucsf.edu
Mon Feb 7 10:47:41 PST 2011
If you just want spheres for your particles, if you reformat your
file into "XYZ" format then Chimera can read that:
UCSF Computer Graphics Lab
On Feb 7, 2011, at 10:26 AM, Tom Goddard wrote:
> Hi Alexander,
> By "particle" do you mean an atomic molecular model (e.g. PDB
> file)? Do you already know the desired rotation and translation for
> each particle? Or do you want to calculate those fits? What you
> want is probably possible but I need more details to give specific
> advice. Chimera is not memory efficient with its molecular models,
> so if your particles are proteins with several thousand atoms and
> you want to load 300 of them, you will need a lot of memory (~2
> Kbytes / atom).
>> Dear colleagues,
>> I would like to fit about 300 particles inside of the map according
>> to it coordinates (X,Y,Z) what I have found before. Is it possible
>> to make this procedure automatically, such that program would load
>> one particle, shift it according to its coordinates (change pixel
>> size if necessary) and so on?
>> Thank you in advance,
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
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