[Chimera-users] (no subject)
goddard at sonic.net
Mon Aug 29 17:35:15 PDT 2011
You're always welcome to visit us at UCSF if you come to San Francisco.
Here's a video showing Elaine's method of measuring positions in an
Fakron, Osama Mohamed wrote:
> Hi Elaine& Tom
> Thank you very much for your kind response . May I have an appointment with you , I would like to come to San Fransisco .
> All the best for you
> From: Elaine Meng [meng at cgl.ucsf.edu]
> Sent: Monday, August 29, 2011 10:42 AM
> To: Fakron, Osama Mohamed
> Cc: chimera-users at cgl.ucsf.edu
> Subject: Re: [Chimera-users] (no subject)
> Hi Osama,
> You could try using the "Volume Tracer" tool (under Tools... Volume Data) to place marker spheres at the location of interest.
> Use the Mouse menu on that tool to control how the markers are placed.
> Then if you select a marker sphere with Ctrl-click and use command "getcrd sel" it will report the coordinates. The coordinates should be in the same system as the volume, as long as you don't move the markers separately from the volume.
> I hope this helps,
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> On Aug 27, 2011, at 1:48 AM, Fakron, Osama Mohamed wrote:
>> My name is Osama M.Fakron , I am PhD student in Mechanical&Material School at Washington State University , I am working on reconstruct 3D image from SEM 2D images by EM3D software ,I am using Chimera for viewing my reconstructed images , I need some help in getting 3D position for any point in my reconstructed image , and also your supporting is appreciated.
>> All the best for you
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