[Chimera-users] Command line
pett at cgl.ucsf.edu
Thu Apr 21 14:03:41 PDT 2011
On Apr 21, 2011, at 11:15 AM, Elaine Meng wrote:
> (B) text file with summary info. We don't have commands for that.
> For things that are Chimera attributes, for example areaSAS for
> residues, you would open Render by Attribute (under Tools...
> Depiction or Structure Analysis), show the desired attribute in the
> histogram, and then use that tool's File menu to save the attribute
> values to a file.
> The number of ions, ligands, chains aren't attributes as far as I
> know. You would have to do something yourself such as "select
> ligand" and then see how many residues were selected.
If you really need to script behavior like (B), you'll have to resort
to Chimera's Python-language interface rather than its command-
language interface. So if you really need to go that route it would
behoove you to familiarize yourself with the Python language (www.python.org
), look through the Chimera programmer's documentation (www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/index.html)
, and then start asking questions (possibly on chimera-dev instead of
UCSF Computer Graphics Lab
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the Chimera-users