[Chimera-users] surface area

yan zhang yanzhang086 at gmail.com
Mon Sep 27 07:00:46 PDT 2010


Hi  sir ,

I used StrucTools server of Area/Volume from Web to calculate the buried
surface of ligand .
The ligand and protein was docked with glide , and then, i saved the complex
into the form of
pdb.I calculate the protein, ligand and complex area respectively , but the
values of protein
and complex were the same . The Surface probe size is 1.5 and Atoms to use
is 'atoms+hetatms' .
Is there something wrong with the pdb file of the complex or my operation?
The three pdb files are in the accessory.

Thanks,
Sweety
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