[Chimera-users] pseudo bonds in mol2 files

Francesco Pietra chiendarret at gmail.com
Fri Oct 1 01:08:47 PDT 2010

I am confused about the meaning of pseudobonds for the aromatic
portion of mol2 files. Typical example sustiva.mol2 in the
antechamber-sustiva tutorial b4 of amber. I have the same
representation for aromatic bonds in modified amino acids. In
contrast, normal bonds from pdb files of the same molecules. Thanks
for clarifying. francesco pietra

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