[Chimera-users] To retrieve intermediate results while using Minimize Structure

Elaine Meng meng at cgl.ucsf.edu
Mon Nov 1 15:31:45 PDT 2010

Hi Saumya,
If you already did the minimization, there is no way.  You just have to specify a certain number of minimization steps, then save, then run again with a certain number of steps, etc.
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Nov 1, 2010, at 9:09 AM, saumyak at ebi.ac.uk wrote:

> Hello,
> I am using Chimera's Minimize structure for protein minimization. I was
> hoping if you could suggest me a way to retrieve intermediate PDB files
> that are generated during the minimization procedure.
> Many thanks,
> Saumya

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