[Chimera-users] Paint a pseudobond....
pett at cgl.ucsf.edu
Thu Jun 24 12:58:48 PDT 2010
On Jun 24, 2010, at 8:41 AM, Yasser Almeida Hernández wrote:
> I want to connect two atoms that belongs to different models with a
> pseudobond. It's that possible with Chimera?
Absolutely. That's the purpose of psuedobonds, to show non-covalent
interactions between models such as hydrogen bonds, NMR constraints,
hydrophobic interactions, etc.
> If it does, how would be the Python API code?
First I should mention that you don't necessarily need to use Python
to do this. The PseudoBond Reader tool can create pseudobonds between
models. But if you are writing a Python script anyway, you would
first create a PseudoBondGroup to contain your pseudobonds like so:
from chimera.misc import getPseudoBondGroup
grp = getPseudoBondGroup("my pseudobonds")
and the create a pseudobond between atoms a1 and a2 with:
pb = grp.newPseudoBond(a1, a2)
UCSF Computer Graphics Lab
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