[Chimera-users] Measuring dimer rotation

Bobby Laird bobbylaird at tamu.edu
Thu Jun 3 08:46:55 PDT 2010


Thank you so much for helping me out on this problem.  I know that you are busy, so I really appreciate your time.

Again, thank you

On Jun 2, 2010, at 1:51 PM, Elaine Meng wrote:

> Hi Bobby,
> You can also do it now with the MatchMaker graphical interface (under Tools... Structure Comparison), using the chain pairing option "Specific chain(s) in reference structure with specific chain(s) in match structure".  Choose a chain in the reference on the left side of the dialog, then choose the corresponding chain in the other structure on the right side of the dialog, choose another chain in the reference, etc.
> I just verified that it works.
> Elaine
> -----
> Elaine C. Meng, Ph.D.                       
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> On Jun 2, 2010, at 11:40 AM, Tom Goddard wrote:
>> The bug where mmaker did not match chains C with C and D with D has been fixed today and the order specified in the command should be respected in tomorrow's daily builds.
>>    Tom

Bobby W.  Laird
Graduate Research Assistant/Ph.D. Candidate
Department of Biochemistry and Biophysics
Texas A&M University
2128 TAMU
College Station, TX 77843
Lab:	(979)862-2264 
bobbylaird at tamu.edu

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