[Chimera-users] alignment + missing residues
gesa.volkers at uni-greifswald.de
Wed Jul 14 06:53:25 PDT 2010
I observed an issue with the alignment function of Chimera.
I loaded a crystal structure where in between a loop is not modelled due
to low electron density- so these residues are missing in the structure
and the numbering also has this gap. When I align this structure with
others, the missing residues are not recognized and chimera just
overrides the numbering so after this loop all the numbers in the
alignment do not fit anymore to the residues they should belong to
although the structure and numberings are shown in the right way in the
graphics window. How can I overcome this issue? Should I change the
pdb-file? In which way?
Thanks for all responses!
Institut für Biochemie, Molekulare Strukturbiologie
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