[Chimera-users] Docking a ligand

SRIRAM SATAGOPAN satagopan.sriram at gmail.com
Mon Jan 4 12:40:27 PST 2010


I have a receptor molecule (pdb file of the protein) and the chemical
formula for the compound that I want to dock it with. I am assuming that I
need to use the viewdock program to look at the docking interactions, but I
just don't know how to go about it without a structure file for the ligand
molecule. Is there a simple way to generate the coordinates for the ligand
from the chemical formula? I would appreciate if someone in the group can
help me out with this.

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