[Chimera-users] question about ViewDock

Miriam Gochin miriam.gochin at tu.edu
Mon Apr 12 14:37:04 PDT 2010

Thank you.
Miriam Gochin
Touro University - CA
miriam.gochin at tu.edu
From: Elaine Meng [meng at cgl.ucsf.edu]
Sent: Monday, April 12, 2010 2:09 PM
To: Miriam Gochin
Cc: chimera-users at cgl.ucsf.edu
Subject: Re: [Chimera-users] question about ViewDock

Hi Miriam,
You can use the command "matrixcopy" to apply the rotation/translation
of the second receptor model to the corresponding ligands.  For
example, if the second receptor is model 3 and the ligands that go
with it are in model 4, try:

matrixcopy 3 4


I hope this helps,
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Apr 11, 2010, at 9:23 PM, Miriam Gochin wrote:

> I have a question about ViewDock.   It works fine for one receptor
> and several ligands, but if I open a second receptor model and
> rotate it, then ligands I open with ViewDock for the second receptor
> are in the original (unrotated) position.  Is there a way to correct
> the ligand positions for the current rotation?

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