[Chimera-users] comparing protein structures

Beale, John John.Beale at stlcop.edu
Thu Oct 1 08:08:11 PDT 2009



I am trying to compare a protein structure generated through molecular
dynamics to a reference structure that is the starting pdb file. I was
using MATCHMAKER. I get the rms value and the residue matches, but when
I do this I don't get the overlaid reference and MD structure in the
viewing window. Can someone tell me what I need to do to get the
overlaid structures?









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