[Chimera-users] confocal stack
goddard at cgl.ucsf.edu
Mon Mar 16 13:30:19 PDT 2009
With a command you can flip through planes 40-80, perpendicular to
the x axis, in volumes #0 and #1 using
volume #0,1 planes x,40,80
This advances the planes for each data set simultaneously. You could
record a movie of this using the movie command.
There is not a way to do this with the volume dialog slider in the
planes panel. That only changes one data set.
In either case there is the problem that Chimera will not blend the
two planes even if each is transparent. Older versions of Chimera could
do the blending, specifically intended for multi-wavelength optical
microscopy. I removed that code about a year ago because it made
development of new features for the majority of Chimera users who do not
have multi-wavelength data more difficult. I'll think about whether
there is a simpler way to provide blending and show matching planes.
Benoit Zuber wrote:
> Is it possible to browse through the planes of more than 1 volume at a
> time? I have some confocal data and I want to browse along the X axis of
> the dataset; each volume corresponds to a confocal channel.
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