[Chimera-users] minmize small molecule

Venkataraman Kabaleeswaran vkabs at yahoo.com
Mon Jul 6 10:35:30 PDT 2009

I wanted to optimize the geometry of small molecule by minimization for docking. 

I have not seen any option in chimera but even I did tried with the small molecule I have as nonstandard aminoacid, but it give me error mmtrk could not Cu atom type.

Is it any small script or through chimera I could able to optimize the small molecule?

Kabaleeswaran Venkataraman

Arise, Awake and stop not until goal is Reached 
                                      - Swami Vivekananda

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