[Chimera-users] missing ribbon loop

klumpler at sci.muni.cz klumpler at sci.muni.cz
Wed Dec 2 03:38:16 PST 2009


Dear Elaine,
I think PDB is alright, I send it as a attachment. Could you help me with
the editing?
Thank you very much
Tomas


> Hello,
> My guess is there is something strange about the structure or the format
of the input file -- for example, maybe the residues don't all have the
same chain ID, or the backbone atoms do not have the expected names
(N,CA,C,O).  If Chimera does not show a ribbon at that position even
though you told it to show ribbons for everything, it is probably
necessary to edit the input file to fix the problem.  I couldn't be more
specific without seeing the file.
> Best,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> On Nov 27, 2009, at 2:16 AM, klumpler at sci.muni.cz wrote:
>
>> Hallo,
>> please, can you tell me how to create missing part of ribbon
>> representation of loop?
>>
>> Using "ball and stick" representation is peptide chain complete without
>> gap, but in "ribbon" representation is one residue missing and forms the
>> gap.
>>
>> Thank you very much
>


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