[Chimera-users] (no subject)
cgovaert at ulb.ac.be
Tue Apr 21 06:23:09 PDT 2009
I want to compute accessible surface area for the backbone, as I want to
compare the predicted amide deuteration between two conformations of a
protein (I have PDBs for both). I tried with VADAR but the results are
puzzling, I suspect they are not correct (the more open structure gets a
Is there a way I can do something like that in Chimera ?
In other word I need to compute how exposed to the solvent are the backbone
atoms (in fact just the NH) and get a table for every position.
Cannot seem to find a simple way to do that with Chimera...
Thanks again for your help
Cedric Govaerts, Ph.D.
Structure et Fonction des Membranes Biologiques (SFMB)
Universite Libre de Bruxelles
Boulevard du Triomphe - CP 206/2
B-1050 Bruxelles (Belgium)
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