[Chimera-users] Contact mapping
pett at cgl.ucsf.edu
Thu Oct 16 10:48:27 PDT 2008
On Oct 16, 2008, at 10:31 AM, Beale, John wrote:
> Is there a way in Chimera to generate interresidue contact maps for
> proteins from MD data?
No, sorry. The closest you can get I think is to run findclash every
frame and write out a list of contacts, which doesn't seem very good.
VMD has a plugin that does exactly what you're asking for though:
Contact Map Plugin, Version 1.1
UCSF Computer Graphics Lab
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