[Chimera-users] How to add change to multiple molecules

Eric Pettersen pett at cgl.ucsf.edu
Mon Nov 3 10:25:16 PST 2008

On Nov 3, 2008, at 9:11 AM, Elaine Meng wrote:

> If you didn't want any dialog
> interactions (for example using Chimera in nogui mode) you would have
> to give the net charge, and in that case you can only do one residue
> type at a time.  That is probably one model in your case if each is a
> small molecule for docking:
>     addcharge nonstd #0.2 -2

One slight correction:  in nogui mode, if you use "addcharge all" it  
will use estimated charges for any non-standard residues.


                         Eric Pettersen
                         UCSF Computer Graphics Lab

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