[Chimera-users] Coloring a binding site

Tom Goddard goddard at cgl.ucsf.edu
Wed Jul 16 14:08:27 PDT 2008

Hi Andy,

  To color a binding site I would select the ligand (DNA in your case) 
then select all the nearby atoms using Select / Zone..., then use 
Actions / Color to color those atoms.

Anindito Sen wrote:
> Another question - I need to color a portion of the crystal structure 
> differently (ribbon diagram) in order to indicate the binding sites of 
> the DNA with the protein molecule and how do I do that.
> Thanks and Best Wishes
> Andy

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