[Chimera-users] saving complex structure
bala at igib.res.in
Tue Jan 1 21:57:09 PST 2008
Dear chimera friends,
I have a protein-RNA complex pdb structure. I want to remove the RNA in the crystal structure and put my RNA molecule in to the binding site.
Since my RNA is very big around 20bp long, i prefer to manually dock my RNA followed by a big simulation than a automated docking. I tried in chimera and i saved the complex structure with the option "save the displayed atoms". But when i see the pdb structure, it has the coordinates of RNA molecule but not the protein. Also when i open the pdb in chimera, it shows me the protein structure. Kindly write me your comments on using chimera i) for such a manual docking and also ii) how to save the complex structure.
Wish you all a happy new year,
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the Chimera-users