[Chimera-users] Aligning two residues same name

Francesco Pietra chiendarret at yahoo.com
Mon Feb 4 06:59:25 PST 2008

Task: compare/align a single-residue molecule before docking (naked molecule,
mol2 or pdb file) with same residue as ligand in a protein after docking/MD
(pdb file of a snapshot for complex embedded in a bilayer membrane). Should I
change the residue name in one of the two models? Same name poses to me
problems. Or there is a direct way?
francesco pietra

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