[Chimera-users] Text statistics from Matchmaker
jnettle at emory.edu
Mon Aug 4 12:32:32 PDT 2008
I have found MatchMaker in Chimera an incredibly useful alignment
tool. Thank you to the UCSF team!
Now, I want to do do a mutliple alignment of many structures (~100)
off a single reference structure, and output a text record of the
residue pairings involved in the individual alignments along with
In this particular case, I'll be looking at only small sequence
variations of the same protein (with different drugs and cofactors).
Accordingly, I would also like to output the RMSD of residue pairs
beyond the alignment cut for relatively easy identification of
regions having maximal variations.
Advise is appreciated,
James Nettles, Ph. D. Assistant Professor
Department of Pediatrics, Emory University School of Medicine
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