[Chimera-users] correlation plot
pett at cgl.ucsf.edu
Fri Apr 25 13:12:58 PDT 2008
On Apr 25, 2008, at 7:32 AM, bala wrote:
> Dear chimera friends,
> I have a simulated trajectory of a RNA molecule. I want to make a
> correlation plot based on residue fluctuation. I am new to
> scritping in python. Can anybody please give me some suggestions or
> any sample script for such analysis if possible.
Is there any particular reason you want to do it in Chimera? It
seems that Simulaid (http://atlas.physbio.mssm.edu/~mezei/simulaid/)
can do the plotting you're asking about, and it's free to academics.
If there is a particular reason you want to use Chimera, I can
provide the programming details related to reading/processing a
trajectory. In that case it would be helpful if you could say what
format your RNA trajectory is in.
UCSF Computer Graphics Lab
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