[Chimera-users] new version available
cwmoad at gmail.com
Tue Oct 25 10:38:49 PDT 2005
The new pyconfig file worked. Thanks for walking me through this.
On 10/25/05, Eric Pettersen <pett at cgl.ucsf.edu> wrote:
> My guess about Charlie's problem is that we are giving him the Python
> header files from our 64-bit Alpha machine. Perhaps the pyconfig.h you
> attached will cure this ill.
> On Oct 25, 2005, at 10:31 AM, Greg Couch wrote:
> > There are lots of special requirements for building chimera. A lot of
> > the
> > work we do is to get chimera running on a variety of platforms. For
> > instance, the Linux chimera is built on Red Hat 7.1 using gcc 3.3.3.
> > We
> > build on an ancient version of Linux so chimera will run on most, if
> > not
> > all, of the current versions of Linux. I've attached the pyconfig.h
> > file
> > from our Linux build, which is probably different than the
> > chimera/include/python2.4/pyconfig.h that you have. For compiler
> > flags,
> > we always pass in "-ansi -pthread -fPIC -malign-double" to gcc.
> > - Greg
> > On Tue, 25 Oct 2005, Charlie Moad wrote:
> >> Date: Tue, 25 Oct 2005 11:55:55 -0500
> >> From: Charlie Moad <cwmoad at gmail.com>
> >> To: Thomas Goddard <goddard at cgl.ucsf.edu>
> >> Cc: chimera-users at cgl.ucsf.edu
> >> Subject: Re: [Chimera-users] new version available
> >> Thanks for posting these. Unfortunately I am hitting a weird error on
> >> any cpython module I try to build.
> >> In file included from
> >> /usr/local/chimera/include/python2.4/Python.h:55,
> >> /usr/local/chimera/include/python2.4/pyport.h:612:2: error: #error
> >> "LONG_BIT definition appears wrong for platform (bad gcc/glibc
> >> config?)."
> >> error: command 'gcc' failed with exit status 1
> >> There a lot of google hits referencing this error, but nothing recent
> >> or helpful. For some reason the architecture is incorrectly
> >> identified as 64-bit. I should note that the stock python does not
> >> generate this error. Are there any special requirements for build
> >> with chimera?
> >> - Charlie
> >> On 10/24/05, Thomas Goddard <goddard at cgl.ucsf.edu> wrote:
> >>> Hi Charlie,
> >>> You're right, the header files I pointed you to in the previous
> >>> email only
> >>> inluded Chimera headers, not Python headers. Sorry about that.
> >>> Here are the Chimera 2181 (same as 2180) headers for Chimera and
> >>> Python.
> >>> https://www.cgl.ucsf.edu/cgi-bin/chimera-get.py?file=source/chimera
> >>> -1.2181-headers.tar.gz
> >>> These will be shown on the Chimera source code page
> >>> http://www.cgl.ucsf.edu/chimera/sourcecode.html
> >>> when our web pages are updated tonight.
> >>> Tom
> >> _______________________________________________
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> >> Chimera-users at cgl.ucsf.edu
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