[chimera-dev] need some scripts from chimera source code

ylei at ecs.umass.edu ylei at ecs.umass.edu
Fri Jun 19 18:04:38 PDT 2009

Hi all

I am working on a project that requiring some program scripts concerning with

1) Compute Amber Energy Function
2) Read rotamer information from the Dunbrack Backbone-dependent
Rotamer library
3) Read in Electron Density Map and get the density value for each 3-D
point in the crystal

I did check some related python files in the source code folder and
can understand them to some extent, but for running these files, some
modules (e.g. Chimera, Rotamers) are needed. However, I don't know how
to install these modules, or maybe I should recompile Chimera from
source code first(If so, then how, because I don't know the procedure
either. BTW, my platform is mac osx)?

Could someone show me which files I should use for the above mentioned
three subjects and what kinds of modules I should install and how?

Thank you so much and sorry for disturbing others.


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