[chimera-dev] Re: bad PDB

[David E. Konerding]

Elaine Meng wrote:

>  Hi Dave,
>When I opened it (it did open on the SGI), I got the usual
>bad PDB record warnings, plus:
>warning:  duplicate atom serial number found: 1
>warning:  duplicate atom serial number found: 2
>warning:  duplicate atom serial number found: 3
>warning:  duplicate atom serial number found: 4
>warning:  duplicate atom serial number found: 5
>warning:  duplicate atom serial number found: 6
>(etc. on up to 141)
>Perhaps this is the problem.  I deleted the first 141 atoms with 0.0
>coords and did not get those messages;  that still leaves plenty of
>0.0 coord atoms at the end, which are not complained about.  You might
>want to try this.
>Elaine
>  
>

By the way,

I fixed the atom serial numbers so they are numbered sequentially from 
1, and chimera still
crashes, showing it's not related to the serial number warning.

Dave