Subject: Re: [nmr_sparky] A pipe2ucsf problem
From: Guowei Yin
Date: May 8, 2015

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Hi Woonghee,

Its a interleaved experiment assembling into a pseudo-3D, 

I used script:

xyz2pipe -in test%03d.fid -z -ri2c
| pipe2xyz -out xy%03d.fid -y -ov

xyz2pipe -in xy%03d.fid -x
| nmrPipe  -fn POLY -time
| nmrPipe  -fn SOL        
| nmrPipe  -fn SP -off 0.5 -end 1.0 -pow 2 -c 0.5
| nmrPipe  -fn ZF -size 4096                                  
| nmrPipe  -fn FT -auto                                                
| nmrPipe  -fn PS -p0 43.0 -p1 0.0 -di -verb                    
| nmrPipe  -fn EXT -x1 11.0ppm -xn 6.5ppm -sw                  
| nmrPipe  -fn TP                                              
| nmrPipe  -fn SP -off 0.5 -end 1.0 -pow 2 -c 1
| nmrPipe  -fn ZF -size 2048                                  
| nmrPipe  -fn FT -auto                                  
| nmrPipe  -fn PS -p0 -90.0 -p1 0.0 -di -verb                
| nmrPipe  -fn POLY -auto                    
| nmrPipe  -fn TP                                              
| pipe2xyz -out 1%03d.ft2 -x


Best,
Guowei


2015-05-08 14:11 GMT-04:00 Woonghee Lee woonghee791113@... [nmr_sparky] nmr_sparky@yahoogroups.com :
 

Hi Guowei,
Did you do xyz2pipe before pipe2ucsf?
It willl be helpful if you can attach NMRPipe script.

Best,
Woonghee

On May 8, 2015 1:03 PM, Guowei Yin puppyg.ruc@... [nmr_sparky] nmr_sparky@yahoogroups.com wrote:
 

Hi,

I recorded a pseudo-3D relaxation experiment on Bruker and used nmrPipe to process it to a set of single 2D spectrum as .ft2 file, all went file. However, when I converted the ft2 file to uscf by pipe2ucsf, there was error messages that: 

 pipe2ucsf: *.ft2 is smaller (10790912 bytes) than expected (107890688 bytes)

This is an error Ive never seen before and couldnt get answer from the webpages. Could anyone give me some suggestions? 

Thank you,
Guowei