Subject: Re: [nmr_sparky] Conversion of HD Exchange HSQC spectra to ucsf format
From: Kari Pederson
Date: Aug 6, 2014

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You might be able to put all the data in one directory (all 150 HSQC folders) and execute the command in bulk. However, since you need to provide an output filename, unless you want them all the same, it might work better to write a short script to first set the filename based on something in the name of the dataset and then execute the command using that filename, which is set for each folder individually.

You can also then read in the whole set of sparky data using a similar bulk command (in linux it would be something like: sparky ~/complete_path/*/*.ucsf where the complete path would get you to the directory containing the 150 HSQCs, the * would tell it to look in all of those directories and then the *.ucsf would tell it to read in the ucsf file in that directory. I forget the folders inside of Bruker data, so you might need to specify a few more levels of directories.

I only know how to do that on a linux system, and am not too sure how to implement it in Windows.

~ Kari

On Aug 6, 2014, at 4:28 AM, arungupta851@... [nmr_sparky] nmr_sparky@yahoogroups.com wrote:

thanks, bruk2ucsf works fine but I have acquired something like 150 HSQCs which I want to convert all in one go instead ofconverting individually each HSQC into ucsf file.