Subject: Re: [nmr_sparky] cyana
From: Ariam Isak
Date: Oct 15, 2012

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Thanks Mandar. I used QD1, QD2... for pseudo carbons. How about naming pseudo protons? Leucine has six delta protons, I tried assigning them a QQD1, QQD2 ... but cyanadidntlike it.


Thanks,
Werkawi


From: Mandar Naik n.mandar@...
To: nmr_sparky@yahoogroups.com
Sent: Sunday, October 14, 2012 1:39 AM
Subject: Re: [nmr_sparky] cyana

Replace all M with Q using any text editor. That should take care of this except if you have pseudo atom names for carbon like CQD etc. In that event change CQD to CD1 and also make one more copy-paste entry for CD2.
-mandar

On Sat, Oct 13, 2012 at 8:45 AM, werkawi ariamisak@... wrote:
Hi Sparky and CYANA users,

where can i find a list of atom nomenclature for use in CYANA?

I used the same nomenclature as in BMRB and saved my chemical shift file in XEASY format (using sparky). however when i fed this to cyana, cyana is saying:

ERROR: Illegal atom name MD for residue ILE 220.

Thanks,