--- In nmr_sparky@yahoogroups.com , Marco m77it@... wrote:



Dear all,

Im using Sparky to look at data processed with Felix. The spectra were imported with File Open but they seem of lower quality in Sparky than in Felix.
Did I make some mistake?
Thanks,
Marco




--- Lun 8/2/10, Thomas Goddard goddard@... ha scritto:

Da: Thomas Goddard goddard@...
Oggetto: [nmr_sparky] Re: Sparky 3.114 / Chimera 1.4
A: Uebach, Sandra uebach@...
Cc: nmr_sparky@yahoogroups.com
Data: Lunedì 8 febbraio 2010, 20:06
Hi Sandra,

   I do not think Sparky will be able to
work with any recent version of
Chimera (1.3 or 1.4).  These Chimera versions are only
a year old, while
the Sparky code to interact with Chimera has not been
updated in many years.

  The Sparky manual only describes which Chimera
version is compatible
for Sparky version 3.112, not later Sparky versions.

http://www.cgl.ucsf.edu/home/sparky/manual/extensions.html#Chimera

   A message on the NMR Sparky Yahoo group
says Chimera 1.2143 works
with Sparky 3.113.

http://tech.groups.yahoo.com/group/nmr_sparky/message/457

But Sparky 3.114 uses Python 2.5 while Sparky 3.113 uses
Python 2.4.
Chimera also uses Python and the Python versions much
match.  Chimera
1.3 and 1.4 use Python 2.5.  So Sparky 3.114 will need
a newer Chimera.
  Chimera was updated to Python 2.5 on Feb 12,
2008.  So you might try
Chimera version 1.2540 (released July 2008)

http://www.cgl.ucsf.edu/chimera/olddownload.html

It may be that no Chimera version works with Sparky
3.114.  Sparky
versions 3.112 - 3.115 are maintenance releases with very
few
differences.  So you could use an older Sparky with an
older Chimera, a
combination that is known to work, if you like.

    Tom



Dear Sir or Madam,

we use your programs sparky 3.114 and chimera 1.4. But
we have
difficulties to combine this two programs. If we open
the chimera model
window and load the pdb-file and press show, we get
this python shell
window.

/* Exception in Tkinter callback
Traceback (most recent call last):
  File
C:Programmesparkypythonlib-tkTkinter.py, line 1345,
in
__call__
    return self.func(*args)
  File
C:Programmesparkypythonsparkychimeraview.py, line
124, in
show_cb
    self.show()
  File
C:Programmesparkypythonsparkychimeraview.py, line
141, in show
    self.chimera_open_model(pdb_path)
  File
C:Programmesparkypythonsparkychimeraview.py, line
203, in
chimera_open_model
    chimera = self.chimera()
  File
C:Programmesparkypythonsparkychimeraview.py, line
157, in
chimera
    start_chimera()
  File
C:Programmesparkypythonsparkychimeraview.py, line
551, in
start_chimera
    chimeraInit.init(argv = [], eventloop =
0, exitonquit = 0)
  File c:Progra~1ChimerasharechimeraInit.py,
line 345, in init
    import chimera
  File
C:ProgrammeChimerasharechimera__init__.py, line 15,
in
module
    from _chimera import *
TypeError: mro() returned base with unsuitable layout

(_chimera.ColorGroup)*/



Would you be so kind to help use to solve this
problem?

We would be grateful for your information.

With kind regards

Sandra Uebach



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