Subject: Re: [nmr_sparky] again NOE assigment table
From: Tom Goddard
Date: Nov 30 6:54 PM

Previous: 467

The noesy assignment diagram (na, diagram button) does not work in
Sparky 3.113. That bug was fixed in 3.114 but that version is currently
only compiled for Windows. You can fix one line of code in your 3.113
distribution to make this work. Change line 134 of

sparky/python/sparky/noesyassign.py

from

palist.append(peak, a)

to

palist.append((peak, a))

adding an extra set of parentheses. Restart Sparky and it should work.

On the Mac the file is

Sparky.app/Contents/Resources/python/sparky/noesyassign.py

and you need to ctrl-click on the Sparky.app icon and choose Show
Package Contents to see inside the Sparky.app folder.

Sparky is not able to make a figure like

http://www.bmrb.wisc.edu/referenc/noe_backbone.html

and it does not have code to output the needed distances from a PDB model.

Tom