On 10/30/07, Mandar T. Naik mandarn@... wrote:
Hi,
Another alternative is discussed in message 222 of CYANA mailing list by Jin-Won Jung. Their python scripts are available at

http://spin.yonsei.ac.kr/solwind/h2orefine.tar.gz.

regards
-mandar

On Sunday 28 October 2007 10:56, Betty Swanson wrote:
Dear All,

I want to carry out water refinement of CYANA generated structures using CNS1.1. Can you ll please help me out? I know there are RECOORD scripts such as generate.sh etc. However, I don t know how to execute them. For instance, simply typing

generate.sh 1KDF.pdb

does not generate any output. It just gives the following message:

generate.sh: command not found.

(I have changed the path such that the location of the RECOORD scripts are defined).

Since some of you ll must have done waterrefinement of structures generated by CYANA, can you please tell me how to do it.

Thanks,

Betty



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